Faculty Profile for Dr. Xiaoyu Xue

profile photo for Dr. Xiaoyu Xue
Dr. Xiaoyu Xue
Associate Professor — Chemistry and Biochemistry
CENT 404
phone: (512) 245-6607

Biography Section

Biography and Education

Associate Professor, Chemistry and Biochemistry, Texas State University, San Marcos, TX (2024-present)
Assistant Professor, Chemistry and Biochemistry, Texas State University, San Marcos, TX (2018-2024)
Associate Research Scientist, Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, CT (2014-2018)
Postdoctoral Associate, Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, CT (2008-2014)
Ph.D., Biology, Tsinghua University, Beijing, China (2008)
B.S., Biochemistry, Nanjing University, Nanjing, China (2003)

Teaching Interests

COURSES TEACHING:
CHEM 4375/5375 BIOCHEMISTRY
CHEM 4481 Advanced Biochemistry Lab I
CHEM 4382 Advanced Biochemistry Lab II
CHEM 5386 Proteins

Research Interests

My previous research focused on understanding conserved mechanisms of DNA replication and repair using methods of biochemistry, genetics, cell biology, and structural biology. In particular, my studies have provided mechanistic information on how the FANCM/Mph1/Fml1 family DNA motor proteins, mutated in the cancer prone disease Fanconi anemia, mediate DNA replication fork repair and the regulation of DNA break repair by homologous recombination. I demonstrated for the first time how the budding yeast FANCM ortholog Mph1 catalyzes replication fork regression and DNA recombination steps, and how its activities are differentially regulated in vitro and in cells by conserved SMC and histone fold complexes (Xue et al., Mol Cell 2014; Xue et al., Genes Dev 2015). I further discovered a new Mph1 partner, Mte1, and defined its roles in regulating Mph1 (Xue et al., Genes & Dev 2016). These studies provide a paradigm for understanding DNA helicase-mediated control of replication fork regression and DNA recombination. These and other research findings are summarized in a review (Xue et al., Genes & Dev 2015).

Currently, research in the Xue group is aimed at investigating how DNA/RNA motor proteins enable precise DNA repair to avoid cell transformation and tumorigenesis. We have obtained important preliminary data on two human helicases and established a strong foundation for mechanistic studies in my laboratory. My research projects include: (1) Roles of nucleic acid motor protein ZGRF1 in chromosome damage repair and disease avoidance (2) Functions of the DNA/RNA motor protein AQR in R-loop resolution. Both lines of studies have great potential for the development of novel strategies to treat human diseases that stem from defects or deregulation in DNA repair, such as Fanconi anemia, neurodegeneration diseases, and familial breast and ovarian cancers. Thus, my studies are both fundamentally important and clinically relevant.

Selected Scholarly/Creative Work

  • Li, S., Mutchler, A., Zhu, X., So, S., Epps, J., Guan, D., … Xue, X. (2022). Multifaceted regulation of the sumoylation of the Sgs1 DNA helicase. The Journal of Biological Chemistry, 298(7), 102092. https://doi.org/10.1016/j.jbc.2022.102092
  • Li, S., Bonner, J. N., Wan, B., So, S., Summers, A. S., Gonzalez, L., … Zhao, X. (2021). Esc2 orchestrates substrate-specific sumoylation by acting as a SUMO E2 cofactor in genome maintenance. Genes & Development, 35(3–4), 261–272. https://doi.org/10.1101/gad.344739.120
  • Lisby, M., & Xue, X. (2020). Protocol for Purification of Human ZGRF1 and Its Regulatory Function on RAD51-Mediated D-Loop Formation. STAR Protocols, 1(2), 100099. https://doi.org/10.1016/j.xpro.2020.100099
  • Brannvoll, A., Xue, X., Kwon, Y., Kompocholi, S., Simonsen AKW, Viswalingam, K. S., … Lisby, M. (2020). The ZGRF1 Helicase Promotes Recombinational Repair of Replication-Blocking DNA Damage in Human Cells. Cell Reports, 32(1), 107849. https://doi.org/10.1016/j.celrep.2020.107849
  • Xue, X., Papusha, A., Choi, K., Bonner, J. N., Kumar, S., Niu, H., … others. (2016). Differential regulation of the anti-crossover and replication fork regression activities of Mph1 by Mte1. Genes \& Development.

Selected Awards

  • Award / Honor Recipient: College Achievement Award for Excellence in Scholarly/Creative Activities, College of Science and Engineering, Texas State University. 2024
  • Award / Honor Recipient: College Achievement Award for Excellence in Scholarly/Creative Activities, College of Science and Engineering, Texas State University. 2022
  • Award / Honor Recipient: Presidential Distinction Award for Excellence in Scholarly/Creative Activities, College of Science and Engineering, Texas State University. 2021
  • Award / Honor Nominee: the International Young Scientist Awards. November 10, 2022

Selected Grants

  • Lewis, Karen A (Principal), Kerwin, Sean Michael (Co-Principal), Whitten, Steven T (Co-Principal), Kornienko, Alexander Vladimir (Supporting), Peterson, Ryan Loren (Supporting), Xue, Xiaoyu (Supporting). MRI: Acquisition of Automated Isothermal Titration Calorimeter for Biophysical Research at Texas State University, National Science Foundation, Federal, $262280. (Submitted: January 19, 2022, Funded: September 1, 2022 - August 31, 2025). Grant.
  • Xue, Xiaoyu (Principal). Roles of the human UAP56 helicase in co-transcriptional R-loop resolution and genome maintenance, NIH/NIGMS, Federal, $436350. (Submitted: October 25, 2019, Funded: September 1, 2020 - August 31, 2024). Grant.
  • Sung, Patrick (Principal), Xue, Xiaoyu (Other). Roles of nucleic acid motor protein ZGRF1 in chromosome damage repair and disease avoidance, NIH/NIEHS, Federal, $460625. (Funded: August 15, 2018 - July 31, 2020). Grant.
  • Xue, Xiaoyu (Principal). Functions of the DNA/RNA motor protein AQR in R-loop resolution, NIH/NIEHS, Federal, $423725. (Funded: December 15, 2017 - November 30, 2020). Grant.
  • Xue, Xiaoyu. Interplay between human BRCA1-BARD1 and DNA/RNA helicase ZGRF1 in R-loop resolution and genome maintenance, Research Enhancement Program (REP), Texas State University, $8000. (Submitted: October 6, 2023, Funded: January 1, 2024 - May 31, 2025). Grant.

Selected Service Activities

Core Faculty
IMBC committee
September 1, 2024-Present
Member
IMBC Graduate Admissions
September 1, 2024-Present
Member
IMBC Faculty Search Committee
September 1, 2024-Present
Member
Faculty Evaluation Committee
September 1, 2024-Present
Department representative
Research Enhancement Program (REP)
September 1, 2024-Present